Conda Installation

Create the environment from environment.yml:

git clone https://github.com/braindatalab/CaliBrain.git
cd CaliBrain
conda env create -f environment.yml
conda activate calibrain

Install CaliBrain into the environment:

python -m pip install -e .

For documentation work:

python -m pip install -e ".[docs]"

Inspect configs/*.py before running workflows, because the default configs may write results to absolute paths on the local machine where the experiments were developed.