Index

B

Benchmark (class in calibrain.benchmark)

C

calibrain.benchmark module calibrain.data_simulation module calibrain.leadfield_simulation module calibrain.source_estimation module

calibrain.uncertainty_estimation module calibrain.utils module config (calibrain.leadfield_simulation.LeadfieldSimulator attribute) construct_full_covariance() (calibrain.uncertainty_estimation.UncertaintyEstimator method) create_experiment_directory() (calibrain.benchmark.Benchmark method)

D

data_path (calibrain.leadfield_simulation.LeadfieldSimulator attribute)

DataSimulator (class in calibrain.data_simulation)

E

eloreta() (in module calibrain.source_estimation)

F

fit() (calibrain.source_estimation.SourceEstimator method)

G

gamma_map() (in module calibrain.source_estimation)

H

handle_bem_model() (calibrain.leadfield_simulation.LeadfieldSimulator method) handle_forward_solution() (calibrain.leadfield_simulation.LeadfieldSimulator method) handle_info() (calibrain.leadfield_simulation.LeadfieldSimulator method)

handle_leadfield() (calibrain.leadfield_simulation.LeadfieldSimulator method) handle_montage() (calibrain.leadfield_simulation.LeadfieldSimulator method) handle_source_space() (calibrain.leadfield_simulation.LeadfieldSimulator method)

I

inspect_matrix_values() (calibrain.data_simulation.DataSimulator method)

L

LeadfieldSimulator (class in calibrain.leadfield_simulation) load_and_validate_leadfield() (calibrain.data_simulation.DataSimulator method)

load_config() (in module calibrain.utils) logger (calibrain.leadfield_simulation.LeadfieldSimulator attribute)

M

module calibrain.benchmark calibrain.data_simulation calibrain.leadfield_simulation calibrain.source_estimation calibrain.uncertainty_estimation calibrain.utils

P

plot_active_sources() (calibrain.data_simulation.DataSimulator method) plot_active_sources_single_time_step() (calibrain.uncertainty_estimation.UncertaintyEstimator method) plot_all_active_sources_single_figure() (calibrain.data_simulation.DataSimulator method) plot_all_sensor_signals_single_figure() (calibrain.data_simulation.DataSimulator method) plot_posterior_covariance_matrix() (calibrain.uncertainty_estimation.UncertaintyEstimator method)

plot_sensor_signals() (calibrain.data_simulation.DataSimulator method) plot_sorted_posterior_variances() (calibrain.uncertainty_estimation.UncertaintyEstimator method) plot_source_estimates() (calibrain.uncertainty_estimation.UncertaintyEstimator method) plot_top_relevant_CE_pairs() (calibrain.uncertainty_estimation.UncertaintyEstimator method) predict() (calibrain.source_estimation.SourceEstimator method)

R

reshape_source_data() (calibrain.uncertainty_estimation.UncertaintyEstimator method)

run() (calibrain.benchmark.Benchmark method)

S

save_path (calibrain.leadfield_simulation.LeadfieldSimulator attribute) set_fit_request() (calibrain.source_estimation.SourceEstimator method) set_predict_request() (calibrain.source_estimation.SourceEstimator method) set_score_request() (calibrain.source_estimation.SourceEstimator method)

simulate() (calibrain.data_simulation.DataSimulator method) (calibrain.leadfield_simulation.LeadfieldSimulator method) SourceEstimator (class in calibrain.source_estimation) subject (calibrain.leadfield_simulation.LeadfieldSimulator attribute) subjects_dir (calibrain.leadfield_simulation.LeadfieldSimulator attribute)

U

UncertaintyEstimator (class in calibrain.uncertainty_estimation)

V

visualize_confidence_intervals() (calibrain.uncertainty_estimation.UncertaintyEstimator method) visualize_leadfield() (calibrain.data_simulation.DataSimulator method)

visualize_leadfield_topomap() (calibrain.data_simulation.DataSimulator method) visualize_signals() (calibrain.data_simulation.DataSimulator method) visualize_sorted_covariances() (calibrain.uncertainty_estimation.UncertaintyEstimator method)