Conda Installation

If you prefer to manage dependencies with Conda, you can create an isolated Conda environment using the provided environment.yml file.

First, clone the repository:

git clone https://github.com/braindatalab/CaliBrain.git
cd CaliBrain

Then create the environment:

conda env create -f environment.yml

Activate the environment:

conda activate calibrain

Finally, install CaliBrain into the activated environment:

pip install .

This ensures that all Conda and pip dependencies are properly installed.

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Optional Setup for Development

If you plan to contribute to CaliBrain or run experiments:

pip install -e .[dev]