Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | U | V _ __init__() (calibrain.calibration_dataset.PosteriorSummary method) (calibrain.DataGenerator method) (calibrain.LeadfieldBuilder method) (calibrain.MetricEvaluator method) (calibrain.run_manifest.ManifestRow method) (calibrain.SensorSimulator method) (calibrain.SourceEstimator method) (calibrain.SourceSimulator method) (calibrain.UncertaintyCalibrator method) (calibrain.UncertaintyEstimator method) (calibrain.Visualizer method) A adaptive_joint_learning aggregate_posteriors() (in module calibrain.workflows.aggregation) aggregated calibration aggregated_componentwise_interval_membership_free() (calibrain.UncertaintyEstimator method) aggregated_ellipse_membership_meg_free() (calibrain.UncertaintyEstimator method) aggregated_ellipsoid_membership_eeg_free() (calibrain.UncertaintyEstimator method) aggregated_interval_membership() (calibrain.UncertaintyEstimator method) apply_calibration() (calibrain.UncertaintyCalibrator method) B baseline noise variance BMN BMN() (in module calibrain) BMN_joint BMN_joint() (in module calibrain) build_uncertainty_components() (in module calibrain.workflows.calibration) C calibrate() (calibrain.UncertaintyCalibrator method) calibration calibration curve calibration_curve() (calibrain.MetricEvaluator method) calibration_curve_componentwise_eeg_free_aggregated() (calibrain.UncertaintyEstimator method) calibration_curve_componentwise_eeg_free_pointwise() (calibrain.UncertaintyEstimator method) calibration_curve_componentwise_intervals_aggregated_free() (calibrain.UncertaintyEstimator method) calibration_curve_componentwise_intervals_pointwise_free() (calibrain.UncertaintyEstimator method) calibration_curve_componentwise_meg_free_aggregated() (calibrain.UncertaintyEstimator method) calibration_curve_componentwise_meg_free_pointwise() (calibrain.UncertaintyEstimator method) calibration_curve_ellipse_meg_free_aggregated() (calibrain.UncertaintyEstimator method) calibration_curve_ellipse_meg_free_pointwise() (calibrain.UncertaintyEstimator method) calibration_curve_ellipsoid_eeg_free_aggregated() (calibrain.UncertaintyEstimator method) calibration_curve_ellipsoid_eeg_free_pointwise() (calibrain.UncertaintyEstimator method) calibration_curve_intervals_aggregated() (calibrain.UncertaintyEstimator method) calibration_curve_intervals_pointwise() (calibrain.UncertaintyEstimator method) calibration_metrics_4() (calibrain.MetricEvaluator static method) coil type componentwise_variance_from_uncert() (calibrain.UncertaintyEstimator static method) concatenate_summaries() (in module calibrain.calibration_dataset) config (calibrain.LeadfieldBuilder attribute) credible interval credible set credible_intervals_normal() (calibrain.UncertaintyEstimator method) D data_path (calibrain.LeadfieldBuilder attribute) DataGenerator (class in calibrain) E EEG EMD emd() (calibrain.MetricEvaluator method) empirical coverage evaluate_all() (calibrain.MetricEvaluator method) evaluate_with_mapping() (calibrain.UncertaintyCalibrator method) F filter_summaries_by_metadata() (in module calibrain.calibration_dataset) fit() (calibrain.SourceEstimator method) fit_mapping() (calibrain.UncertaintyCalibrator method) forward model free orientation full_cov G gamma_lambda_map_sflex gamma_lambda_map_sflex() (in module calibrain) gamma_map_sflex gamma_map_sflex() (in module calibrain) get_data_path() (in module calibrain.utils) get_leadfield() (calibrain.LeadfieldBuilder method) get_subset_source_rr() (in module calibrain.metric_evaluation) H handle_bem_model() (calibrain.LeadfieldBuilder method) handle_forward_solution() (calibrain.LeadfieldBuilder method) handle_info() (calibrain.LeadfieldBuilder method) handle_leadfield() (calibrain.LeadfieldBuilder method) handle_montage() (calibrain.LeadfieldBuilder method) handle_source_space() (calibrain.LeadfieldBuilder method) head I inverse problem isotonic regression iter_calibration_records() (in module calibrain.calibration_storage) L leadfield LeadfieldBuilder (class in calibrain) lift_meg_2d_to_3d() (calibrain.UncertaintyEstimator static method) lift_reduced_sources_to_3d() (in module calibrain.uncertainty_estimation) load_calibration_record() (in module calibrain.calibration_storage) load_config() (in module calibrain.utils) load_manifest_csv() (in module calibrain.run_manifest) load_posterior_summary() (in module calibrain.calibration_dataset) load_python_config() (in module calibrain.utils) logger (calibrain.LeadfieldBuilder.self attribute) M mae() (calibrain.MetricEvaluator method) main() (in module calibrain.workflows.plot_paper_calibration_figures) ManifestRow (class in calibrain.run_manifest) marginal mean_posterior_std() (calibrain.MetricEvaluator method) MEG metadata (calibrain.calibration_dataset.PosteriorSummary attribute) (calibrain.run_manifest.ManifestRow attribute) MetricEvaluator (class in calibrain) mse() (calibrain.MetricEvaluator method) N noise-variance strategy nominal coverage O oracle noise variance P path (calibrain.calibration_dataset.PosteriorSummary attribute) plot_active_sources() (calibrain.Visualizer method) plot_all() (calibrain.Visualizer method) plot_calibration() (calibrain.Visualizer method) plot_ci() (calibrain.Visualizer method) plot_eeg_ellipsoid_membership_aggregated() (calibrain.UncertaintyEstimator method) plot_eeg_ellipsoid_membership_pointwise() (calibrain.UncertaintyEstimator method) plot_fixed_interval_membership_aggregated() (calibrain.UncertaintyEstimator method) plot_fixed_interval_membership_pointwise() (calibrain.UncertaintyEstimator method) plot_meg_ellipse_membership_aggregated() (calibrain.UncertaintyEstimator method) plot_meg_ellipse_membership_pointwise() (calibrain.UncertaintyEstimator method) plot_pointwise_coverage_map() (calibrain.Visualizer method) plot_pre_post_calibration_curves() (calibrain.Visualizer method) plot_reconstructed_active_sources() (calibrain.Visualizer method) plot_sensor_signals() (calibrain.Visualizer method) plot_source_and_sensors() (calibrain.Visualizer method) plot_source_signals() (calibrain.Visualizer method) plot_stc_3d_brain() (calibrain.Visualizer method) pointwise_componentwise_interval_membership_free() (calibrain.UncertaintyEstimator method) pointwise_ellipse_membership_meg_free() (calibrain.UncertaintyEstimator method) pointwise_ellipsoid_membership_eeg_free() (calibrain.UncertaintyEstimator method) pointwise_interval_membership() (calibrain.UncertaintyEstimator method) post_fixed post_oracle post_pooled post_pooled_mismatch posterior covariance posterior mean posterior summary posterior_variance_from_cov() (calibrain.UncertaintyEstimator static method) PosteriorSummary (class in calibrain.calibration_dataset) precal precompute_meg_tangent_bases_svd() (calibrain.UncertaintyEstimator method) predict() (calibrain.SourceEstimator method) project_meg_3d_to_2d() (calibrain.UncertaintyEstimator static method) R recalibration reduce_meg_leadfield_svd() (calibrain.UncertaintyEstimator method) reduced free-orientation MEG rmae() (calibrain.MetricEvaluator method) rmse() (calibrain.MetricEvaluator method) run manifest run() (calibrain.DataGenerator method) run_calibration() (in module calibrain.workflows.calibration) run_data_generation() (in module calibrain.workflows.data_generation) S save_calibration_record() (in module calibrain.calibration_storage) save_path (calibrain.LeadfieldBuilder attribute) sensor noise SensorSimulator (class in calibrain) set_fit_request() (calibrain.SourceEstimator method) set_score_request() (calibrain.SourceEstimator method) set_sensor_metadata() (calibrain.SensorSimulator method) simulate() (calibrain.LeadfieldBuilder method) (calibrain.SensorSimulator method) (calibrain.SourceSimulator method) source activity source space source_estimator SourceEstimator (class in calibrain) SourceSimulator (class in calibrain) stack_empirical_curves() (in module calibrain.calibration_storage) subject (calibrain.LeadfieldBuilder attribute) subjects_dir (calibrain.LeadfieldBuilder attribute) summaries_from_manifest() (in module calibrain.run_manifest) summary_path (calibrain.run_manifest.ManifestRow attribute) U uncertainty representation UncertaintyCalibrator (class in calibrain) UncertaintyEstimator (class in calibrain) V Visualizer (class in calibrain)
