Conda Installation

Use this method if you want to create the environment defined by the repository environment.yml file.

Clone the repository

Download the source code:

git clone https://github.com/braindatalab/CaliBrain.git
cd CaliBrain

Create the conda environment

Create the environment from environment.yml:

conda env create -f environment.yml
conda activate calibrain

Install CaliBrain into the environment

Install the package from the checkout:

python -m pip install -e .

Optional extras

For documentation work:

python -m pip install -e ".[docs]"

For development work:

python -m pip install -e ".[dev]"

Check that the installation worked

python -c "import calibrain; print(calibrain.__version__)"